rs244484562 SNP Detail

Summary

• ID
  rs244484562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126395349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAGGTT ACCAAGAGGA
  CTAAGACCAA CAAGAAGCTG GTAAGAACCC AGCATATTTT GGTGCCTGTG GAGGGTGGAG
  CATCACAGCT GATAGTTGGT CACCTGCTTC CCTCCTTCCC TTGATGGTGT AACTGAGGGA
  GCCAGGACTA TATGACTGCA TATGTGTTTT TCTACTCTAT CCTTGTGACT GTGCTACCAT
  Y
  CTGACAGTGA GACAGTGACG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAAGCACAA GGGTTGTGTC TGCCTCAGAA
  TCACCCACAA CATGAGACCA ACACAACGTG TCTTTGTGAG CTCTGACTTA GATCAAATAA
  ATAGGAAGGG AGACTCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376397603	MGP_WTSI_8_128192510	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244484562					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376397603	MGP_WTSI_8_128192510	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126395349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	743 bp proximal
Gm30871	predicted gene, 30871	1487 bp upstream
Gm63868	predicted gene, 63868	21 bp downstream
Map10	microtubule-associated protein 10	1208 bp upstream
Rr175263	regulatory region 175263	652 bp proximal
Rr186277	regulatory region 186277	851 bp proximal
Rr188607	regulatory region 188607	924 bp distal
Tssr80077	transcription start site region 80077	1218 bp upstream
Tssr83475	transcription start site region 83475	1127 bp downstream