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rs244485836 SNP Detail
Summary
  • ID
    rs244485836
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr8:27752188 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCCGTCCCT TTCTGGATGA
    ACAGGTTAGC TGGGTAGCAA TAGCCAGTAC TGTTTGTAAT GCACTCTGAT CCACTTCTCA
    CTGTGGTCTG CGAAGTGTCC GTTGGCAGAC CAGGTAGTTC CCGTTGTCTT TGAAGAGGAA
    GGGGTTTCCT TAGAGTGTAG CATTTGCTTC TTAACTGAAA GAAAGCAGTG TCAGGTCCCC
    R
    AAGCCAGCTG GCCCTTGTCA GATTTTTGTT GCTGTTGTTG TTGTTTGTGT GTCACACAGT
    CCATAGCTCG AGGAAAGACT TGCTTGTTTC TGCCAAAGCC AGTTAATTTA AGGAGTGGGA
    TCTTTTCCCA AAGGCCATTC ATTCCAGGTC GCCTCTGCTA AAGGGCAGAA GCTTGACCCA
    TTTGCTCCAG AATGTTTCTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss374046299 MGP_WTSI_8_28372632 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A G G A G A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244485836 SNP A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A G G A G A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss374046299 MGP_WTSI_8_28372632 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:27752188 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi20220 CpG island 20220 533 bp distal
Eif4ebp1 eukaryotic translation initiation factor 4E binding protein 1 within coordinates
Rr186444 regulatory region 186444 within coordinates
Rr186445 regulatory region 186445 1012 bp proximal
Tssr76776 transcription start site region 76776 1828 bp downstream
Tssr76777 transcription start site region 76777 1790 bp downstream
Tssr76778 transcription start site region 76778 1742 bp downstream
Tssr76779 transcription start site region 76779 1698 bp downstream
Tssr76780 transcription start site region 76780 1651 bp downstream
Tssr76781 transcription start site region 76781 727 bp downstream
Tssr76782 transcription start site region 76782 586 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory