rs244504467 SNP Detail

Summary

• ID
  rs244504467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGGCGAG TGCGTTGTTA
  CCTACGCGTG CACTAGTGGC CCTGGGATCG ATCCTCTTTT GCTCTGCGTC CCCTTCTAAC
  CACTCTGGAT CTGCGGGTTT AGCGTAGATG GCCTTGTGAG CATTTCTTGA GAACTTGGGT
  TGTGCACGTG GGGGGAGGTA TTGTTTTAGT CCTAGGCTGT GGTCAGATGC AATTTTGGGG
  Y
  CCAGCGATGC AAGTCGTGTG CCGCGACCGT TTAGTAACCT TCCCTGCGTC CCCCAACTCC
  CCACCCGTCC CACCCTTTTC TTCCCGGCTT GCAGCTGCGA GCTGGAACGT AACTCTTTTT
  GCTCCAACGG AAGCCAGAAC TTATGTCCTG CCCTGGAGTG GGTTGAAGAG TGGGGGGATG
  GGCGGAAAGG AAGACAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342595	CHEV_2_72314927	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244504467					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdca7	cell division cycle associated 7			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr397036	regulatory region 397036			804 bp downstream
Rr558978	regulatory region 558978			1585 bp distal
Rr558979	regulatory region 558979			701 bp distal
Rr558980	regulatory region 558980			within coordinates
Rr558981	regulatory region 558981			1256 bp proximal
Tssr18351	transcription start site region 18351			870 bp downstream
Tssr18352	transcription start site region 18352			658 bp downstream
Tssr18353	transcription start site region 18353			646 bp downstream
Tssr18354	transcription start site region 18354			611 bp downstream