rs244511979 SNP Detail

Summary

• ID
  rs244511979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:27388663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTAAAA GCGCATTCAA
  GCGCCTTTCC TGAGTTCTAA CTGGGATTTA AAAAAAAAAA AAAAAAAAAA AAAAGAAAGA
  AAGAAAAGAT TTCTTTTTTT CCTGATCTCC AACCAAGAAC TGTCTCTTCT TTTCCTACCA
  AGAAACTCGG CCACATAATT TTAAAATACA AATTGCAGCT ATGCTTCCAT TCTGAAGCCA
  R
  ATCCTCACTC CTTTTCTAAT TTATTTAAAA GTTCCTTCCT CACCATGGAA AACGCCCGAC
  GGGAAACGGG AACACATGCA AATGTTAAGA ACTCAAGACA CTCAGAATGC CTTTTCCTTA
  GGCTTCAGAA TCTGTCCCCA GTAAACCGCT GGTGAAATTA TTCGCGGCTT AAAGGTCCCC
  GCGTGGCTCA CAGCAGGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385383307	MGP_WTSI_12_28023529	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244511979					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385383307	MGP_WTSI_12_28023529	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27388663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	83 bp proximal
Rr464225	regulatory region 464225	1369 bp distal
Rr464226	regulatory region 464226	within coordinates
Sox11	SRY (sex determining region Y)-box 11	mRNA-UTR
Tssr113044	transcription start site region 113044	699 bp upstream
Tssr115967	transcription start site region 115967	1827 bp upstream
Tssr115968	transcription start site region 115968	1813 bp upstream
Tssr115969	transcription start site region 115969	1732 bp upstream
Tssr115970	transcription start site region 115970	1697 bp upstream
Tssr115971	transcription start site region 115971	1641 bp upstream
Tssr115972	transcription start site region 115972	1528 bp upstream
Tssr115973	transcription start site region 115973	1166 bp upstream
Tssr115974	transcription start site region 115974	1109 bp upstream
Tssr115975	transcription start site region 115975	1078 bp upstream
Tssr115976	transcription start site region 115976	1058 bp upstream
Tssr115977	transcription start site region 115977	1040 bp upstream
Tssr115978	transcription start site region 115978	414 bp upstream
Tssr115979	transcription start site region 115979	324 bp upstream
Tssr115980	transcription start site region 115980	146 bp upstream
Tssr115981	transcription start site region 115981	519 bp downstream
Tssr115982	transcription start site region 115982	742 bp downstream
Tssr115983	transcription start site region 115983	1520 bp downstream
Tssr115984	transcription start site region 115984	1535 bp downstream
Tssr115985	transcription start site region 115985	1593 bp downstream
Tssr115986	transcription start site region 115986	1609 bp downstream
Tssr115987	transcription start site region 115987	1630 bp downstream
Tssr115988	transcription start site region 115988	1657 bp downstream
Tssr115989	transcription start site region 115989	1705 bp downstream
Tssr115990	transcription start site region 115990	1776 bp downstream
Tssr115991	transcription start site region 115991	1863 bp downstream
Tssr115992	transcription start site region 115992	1954 bp downstream