rs244537974 SNP Detail

Summary

• ID
  rs244537974
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129272790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGAAAT AAAAAGGAAA
  GGGACATGCC TGGTCCTAGG TATAGTGGAG GAGAAAGTTT ATTATAGATA TGTGGGAGAG
  CACAGCCAGA GGCAGGAACA TCTGGGAGAG TACAGAGTGA ACTGAGCTGT GCCCTGTGAT
  GTGGGGTGGG GGAGGGAGGA GAGAGAGCAG CAGAACCAAG TACAGCAGGA GACCCAAATT
  W
  CAAAGAGGGT AGGGAGCCAA AATGGTTGGA TTATATAGGG AAGAATAGCT CAGCCCCCTG
  GACTGGAGGA TTCAAGCTAG GGGGCCGGAT ATGCCAGCCT AGAGGACCCT GTAACAGGTA
  TTGGACTGAG GGATGCTGGG AGAACCTGGT GGCCAGGTCA GCTTTGACAT GTTAACTAGG
  CACCCCAGCT ATTTGTCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312500	CHEV_4_129056241	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244537974					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129272790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	918 bp distal
Gm12980	predicted gene 12980	847 bp upstream
Rr377177	regulatory region 377177	817 bp upstream
Rr600215	regulatory region 600215	892 bp distal
Rr600216	regulatory region 600216	1416 bp distal
Rr600217	regulatory region 600217	625 bp distal
Tssr43497	transcription start site region 43497	1159 bp upstream
Tssr43498	transcription start site region 43498	1073 bp upstream
Tssr43499	transcription start site region 43499	1047 bp upstream
Tssr43500	transcription start site region 43500	within coordinates
Zbtb8a	zinc finger and BTB domain containing 8a	969 bp upstream