rs244538721 SNP Detail

Summary

• ID
  rs244538721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80073409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGATGT GTGCCTTCAT
  GCCTGATGAG GTCCTCTGAA TTTACTGATT TTTTTTTAAT TCCCCGGTCA GAGAAGCTGC
  AATACAAATT CTGGATGTGT CTCTCCAGAG TGCAGCTCCC TGGGGAGGTG GATCCTCTCT
  AGCTTCTAAA GTTCTTTGGA CCTGACTGCT GAGGTACCTG CTAGAGCAGT GATTCTCAAT
  R
  AGTGGGTCAT AACACCTTTG GCAAACTCCT ATATTCACAT GACTATTCAT AACAGTTGCA
  AAATTACAGT TGTGAAGTAG CAAGAAAATT ATTTTTTAAA GATTTGTTCA TTTATTTTAT
  GTATATGAGT ACACTGTAGC TGTCTTCAGA CATACCAGAT CCCATTACAG ATGGTTGTGA
  GCCACCATGT GGTTGCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323761720	CHEV_11_79996085	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244538721					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80073409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3379	CpG island 3379	1178 bp proximal
D11Bhm113	DNA segment, Chr 11, Boehm 113	1510 bp distal
Rnf135	ring finger protein 135	1268 bp upstream
Rr386348	regulatory region 386348	764 bp downstream
Rr402781	regulatory region 402781	1132 bp upstream
Rr452449	regulatory region 452449	999 bp distal
Rr452450	regulatory region 452450	778 bp proximal
Rr452451	regulatory region 452451	785 bp proximal
Rr452452	regulatory region 452452	972 bp proximal
Tssr3599	transcription start site region 3599	1324 bp upstream
Tssr103509	transcription start site region 103509	1278 bp upstream
Tssr103510	transcription start site region 103510	1303 bp upstream