rs244556218 SNP Detail

Summary

• ID
  rs244556218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88484181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTGTCT CTTCTCTGCT
  CCACAGTAAG CATTGAAGGA TCTGCCTGCT GGGCTCTAGA GGGAGGGCTC CCTGTGGGAG
  CTTTGCAAGG AGGCTCTAGA GCTGTCTTGG CAGACCATGG TGCTGGTCAC ATGCATCACC
  ACCACCTCTT CTGAGGAAAG ACTCATGTTC TCTCAACTAA CATCCTGAGT CCTCCCCTGG
  R
  TAGACCTTCA GCCCAGAACA AGAAGGGGCA GAAGCCCAGG CTCTGGACCA CACAACAGGT
  GTGAAGCCCT CACCTGGTCT CTTCTGGTAA TTTACTTAAC TTCCTCTTGC CTCAGTTTCC
  TCAAAGCAAA GAGGTTCCAA CAGGTTCGTT CAGAGTGGAG AAAGCAAAAC CAAAGGGCCA
  CCACCTATAG GTGTCTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394888189	MGP_WTSI_15_88430408	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	A	A	G	A	A	A	A	G	G	A	A	A	A	G	G	G	A	A	A	G	G	G	G	A	A	A	A	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244556218					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	A	A	G	A	A	A	A	G	G	A	A	A	A	G	G	G	A	A	A	G	G	G	G	A	A	A	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394888189	MGP_WTSI_15_88430408	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88484181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7510	CpG island 7510	609 bp proximal
Gm62180	predicted gene, 62180	within coordinates
Tssr132609	transcription start site region 132609	302 bp upstream
Tssr135809	transcription start site region 135809	228 bp downstream
Zdhhc25	zinc finger, DHHC domain containing 25	324 bp upstream