rs244566019 SNP Detail

Summary

• ID
  rs244566019
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85921309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACGCTCC CGGCTTCTCT
  TACCTTTCTG CAGGTAAGAT CTTCCCTGTT CCCCTACCCT GGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGATCCGGAA TTCCCACCCC TCCCCACACT CGGGCGCGGG TGGTCAGTCT
  TTGGCCGACG GGGTGAGGTG AGGGGTAAGG TGGCTTCTCT GTGTGCGATG GGTCCCGCAC
  K
  ACCAACACAG GGTGGGGGGC ACTACCTGTG TAGGACGAGA GGGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAATTGAG ATTGTGCGCC
  CCCGAGCGCG CGTCTGCTCT ATGCGCGCAT TAGGGACATT TTTGGACTTT TCTCTCGGAC
  GCCCCGGATC TCTTGCCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486757	CHEV_17_86013221	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244566019					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85921309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	809 bp distal
Cpgi9588	CpG island 9588	within coordinates
Cpgi9589	CpG island 9589	798 bp proximal
Gm55782	predicted gene, 55782	277 bp downstream
Gm55783	predicted gene, 55783	781 bp upstream
Gm55784	predicted gene, 55784	1079 bp upstream
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	643 bp downstream
Tssr146085	transcription start site region 146085	396 bp downstream
Tssr149705	transcription start site region 149705	1504 bp upstream
Tssr149706	transcription start site region 149706	817 bp upstream
Tssr149707	transcription start site region 149707	921 bp downstream
Tssr149708	transcription start site region 149708	1119 bp downstream
Tssr149709	transcription start site region 149709	1166 bp downstream
Tssr149710	transcription start site region 149710	1255 bp downstream
Tssr149711	transcription start site region 149711	1283 bp downstream
Tssr149712	transcription start site region 149712	1573 bp downstream