rs244566573 SNP Detail

Summary

• ID
  rs244566573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20290602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAACTCAG AAATCTGCCT
  GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GCGTGTGCCA CCACTGCCCA CATGAATTTT
  TATTTTTAAA TAATTCAACT GTAACAGTAA TTGTGGACTA AATATTTTAC CACTCATAGA
  CTTACATAAA ATAAAGTAGA ATCATATCTA CAATATGAAA AACAGACAAA ATACAAGAGC
  Y
  CACATTTCTG TTTAAACCTA GAAATATAAG TGAAAATAAC TATATTAATT CATCATAATT
  GTGAATGATG CATTTTCAAT TCTAGCAAGG TAAATTAAAA AAAGTTGTTT TCAAGCATCT
  GTATTTCAAA GGTCCAGGAA CCAGTAGTAA ATTATGTACA CTTGTTTTAT ATATTACTAC
  TATACATCAT GTCTCCCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403198097	MGP_WTSI_X_20001489	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs244566573					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403198097	MGP_WTSI_X_20001489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20290602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22644	CpG island 22644	796 bp proximal
Jade3	jade family PHD finger 3	1325 bp upstream
Rr690392	regulatory region 690392	835 bp proximal
Rr690393	regulatory region 690393	1264 bp proximal
Rr690394	regulatory region 690394	1336 bp proximal
Rr690395	regulatory region 690395	1609 bp proximal
Rr690396	regulatory region 690396	1953 bp proximal
Tssr160640	transcription start site region 160640	996 bp upstream
Tssr160641	transcription start site region 160641	1380 bp upstream
Tssr160642	transcription start site region 160642	1417 bp upstream