rs244590289 SNP Detail

Summary

• ID
  rs244590289
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164662967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGGATT ACATAGACTT
  CTTTAATACC AAAGGTCTGA AGAGCTTGCC CACAAATGCT CCCAAGTTAA GGAGAACTCG
  GCTCCCAAGC ACGCCTCCAA GGCCCAAGAA GCCTTTTAGA ATTTGTGGTG GGGGTGACAC
  CAGGCTCCCT GTGGAAGAGG TAGAAGAGAC AAAGGCAGAC TCAGCACAGT CTCAGTTGCC
  M
  CAGCCCCAGG ATCAGTCCTC CAAGGCTGGC ATGCTAGACA TCTTGCACCA GAGTGGCTCT
  GAACTAGCCT ACAAGTTGTG TCATAATGAG TGGGAGGTGG TACAGAATTC CACCCACCTG
  GTAGACGAGG CCGGCTCCTC AGTGGCTGTT CAGCTGCTAG AGAACTCACA CCAGGTGAGC
  AAAGATGGCT GTAGCTGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356441585	MGP_WTSI_2_164646547	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244590289					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356441585	MGP_WTSI_2_164646547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164662967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12673	CpG island 12673	1733 bp proximal
Gm75078	predicted gene, 75078	within coordinates
Rr374206	regulatory region 374206	1122 bp upstream
Rr569723	regulatory region 569723	1221 bp proximal
Rr569724	regulatory region 569724	1650 bp proximal
Rr569725	regulatory region 569725	1754 bp proximal
Tssr21653	transcription start site region 21653	1914 bp upstream
Tssr21654	transcription start site region 21654	1954 bp upstream
Tssr27543	transcription start site region 27543	48 bp downstream
Zswim1	zinc finger SWIM-type containing 1	1966 bp upstream
Zswim3	zinc finger SWIM-type containing 3	Coding-Synonymous