rs244591290 SNP Detail

Summary

• ID
  rs244591290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81149212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTATGCTT CTCAGGCTAA
  GAAAAACCAC TAAAGAAGCA GAAACCTATA CCGAATATAC GGCAGCTTCA TTTTGAGCAG
  ATATGATATG ATTAATAACT TCTGTTAGTT TCACTGTGTC CCTAACGATG ACACCATTGC
  ATACACTAGC AAGCGTTTGT TGCAAGGACC GTGATATAGC TGTCCCTTGT GAGACTAGGC
  Y
  GGGGCCTAGC AAACACAGAA GTGGATGCTC ACAGTCAACT ATTGGATGGA TCACACGGCC
  CCCAATGGAG GAGCTAGAGA AAGTATCCAA GGAGCTAAAG AGATCTGCAA CTTTGTAGGT
  GCAACATTAT GAACTAACCA GTATCCCGGA GCTCGTGTCT CTAGCTGCAT ATGTATCAAA
  AGATGGCCTA GTCGGCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	QSi3/Ianm	RF/J	SM/J	SPRET/EiJ	WSB/EiJ
ss358629394	MGP_WTSI_3_81045827	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	QSi3/Ianm	RF/J	SM/J	SPRET/EiJ	WSB/EiJ
rs244591290					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358629394	MGP_WTSI_3_81045827	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81149212 () rs orientation: forward

Symbol	Name	Function Class
Rr578700	regulatory region 578700	1030 bp proximal