rs244595254 SNP Detail

Summary

• ID
  rs244595254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126859973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCAATGA TAAATATATG
  AAGAGAGCCC AACATTTTGC AAACCTAAGA CAACCAACAT TACATTTTAA TTATTAAAAA
  TGCTAAAATG CAGTGTACTT AAAAGACTAA TGGGGGCTGG TGAGATGGCT CAGTGGGTAA
  GAGCACCCGA CTCCTCTTCC GAAGGTCCAG AGTTCAAATC CCAGCAACCA CATGGTGGCT
  Y
  ACAACCATCT GTAAAGAGAT CTGACTCCTT CTCCTGGAGT GTCTGAAGAC AGCTACAGTA
  TACTTACATA TAATAAATAA ATAAATCTTA AAAAAAAAAA AAAGACTAAT GAATGACTGG
  GTAAAGAGAT GGCTTGATGA AATAACTAGG TTTGGTAAAC AAGAATCTGG GAAAACTGTC
  AATAGTAGAA TCTAGGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363166573	MGP_WTSI_4_126643424	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244595254					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363166573	MGP_WTSI_4_126643424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126859973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14832	CpG island 14832	1045 bp proximal
Rr398497	regulatory region 398497	1885 bp upstream
Rr599780	regulatory region 599780	887 bp proximal
Rr599781	regulatory region 599781	1945 bp proximal
Tssr43405	transcription start site region 43405	1812 bp downstream
Tssr43406	transcription start site region 43406	1870 bp downstream
Tssr43407	transcription start site region 43407	1944 bp downstream
Tssr43408	transcription start site region 43408	1979 bp downstream
Tssr43409	transcription start site region 43409	2000 bp downstream
Zmym4	zinc finger, MYM-type 4	within coordinates