rs244596382 SNP Detail

Summary

• ID
  rs244596382
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33997245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTGC ATTATGAACC
  CCCAGAGCTG TCCTTCCTTG TTTACTTATT TAGAAGTCAG CAGAGGAAGT GGTAAAGGAA
  ACTAGCTGAG TCGTTTTCTG AGAAGAGACC ATATTTGTTC ACAGGGGAAG CCGCTGCTTT
  TGGGGATCTG GCTACAGCAG AAAAGAGTCC TCTTCAACAA GGGTGTTCCT GAGAGCATCT
  K
  GGAATCAGAA GAGCCAAGGA CACCTCAGAG CTCTGGATCT GGGCTTTTCC CCTGTTCATG
  GCTGCATCGC CTCTCCTCAG TTTGTGAGCC TCTCCCTGTA GAGCAGCCAT GGCCTTGAAG
  AATGTCCCGT TTCGCTCAGA GGTCCTAGCC TGGAACTCAG ACAACCTCGC TGACTATTTC
  AGGAAGGTGG GTCTTTCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382946719	MGP_WTSI_11_33947245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244596382					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382946719	MGP_WTSI_11_33947245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33997245 () rs orientation: forward

Symbol	Name	Function Class
4930469K13Rik	RIKEN cDNA 4930469K13 gene	within coordinates
Lcp2	lymphocyte cytosolic protein 2	within coordinates
Rr444895	regulatory region 444895	67 bp distal
Tssr100891	transcription start site region 100891	287 bp downstream
Tssr100892	transcription start site region 100892	152 bp downstream
Tssr100893	transcription start site region 100893	3 bp downstream
Tssr100894	transcription start site region 100894	within coordinates
Tssr100895	transcription start site region 100895	45 bp upstream
Tssr100896	transcription start site region 100896	76 bp upstream
Tssr100897	transcription start site region 100897	401 bp upstream
Tssr100898	transcription start site region 100898	1586 bp upstream
Tssr100899	transcription start site region 100899	1726 bp upstream