rs244599106 SNP Detail

Summary

• ID
  rs244599106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTAGGGTT TGAGAGGTAA TGTACTGAGT
  ATGAAAATCA GCGACGAAGC TGGAATCTGG AGGTAGCGTA ACTAAAAAAA CAAAAAGTTA
  AGGTGAAAAG TTCTGTGTTC CTCTGAGCTT TTAAGTCTCA CTTTAACAGG AGTCATTTAA
  R
  AATAAAATAG TTTTTCTCTG TTATTCCCAT TCTGTCATCA AAATAGAAAC AATAGATGCC
  GTTTGTCATT CCAGCGTAGT CAATCCAGAA GCCAGCGAAG GCTAATACTG AATGTGTAGA
  ATGAGTTCTT CCATATCTAG GTTATCGGCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261874	CHEV_16_84776105	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244599106					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	628 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Rr518533	regulatory region 518533	1464 bp distal
Rr518534	regulatory region 518534	498 bp distal
Tssr139179	transcription start site region 139179	1985 bp downstream
Tssr139180	transcription start site region 139180	1956 bp downstream
Tssr139181	transcription start site region 139181	1767 bp downstream
Tssr139182	transcription start site region 139182	1715 bp downstream
Tssr139183	transcription start site region 139183	1686 bp downstream
Tssr139184	transcription start site region 139184	1663 bp downstream
Tssr139185	transcription start site region 139185	1622 bp downstream
Tssr139186	transcription start site region 139186	1566 bp downstream
Tssr139187	transcription start site region 139187	1546 bp downstream
Tssr139188	transcription start site region 139188	1528 bp downstream
Tssr139189	transcription start site region 139189	1437 bp downstream
Tssr139190	transcription start site region 139190	1421 bp downstream