rs244634397 SNP Detail

Summary

• ID
  rs244634397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162399947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGAAGCT GACTTCAATG ATATTACTTT
  GATTCGGGCT TCTCTTAGTG CCTTACCATC AATAAACTGA TATCTAAATT ATTTAAATAT
  GTTTGTTTGT TTTTTATAGA AGATAGGTTG TTATAAGAAA GGATACCTTT CTAAAACAGA
  R
  TTCTAGAACA CGATGGCAAC TAAATGACTA AATATTAAAA CTGATAGTGC ATAGCCACTT
  ATTGGTCTGT TTGAGTGGTG TGACATAACA CAGTTATCTT AGTAAATTTT CTTAATGCTT
  ACTTGAAAGA AGTGTCAAGA ATAAAAGAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320082942	CHEV_1_164502509	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244634397					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162399947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	765 bp distal
Rr396472	regulatory region 396472	1673 bp downstream
Rr396473	regulatory region 396473	936 bp downstream
Rr421988	regulatory region 421988	1142 bp distal
Rr421989	regulatory region 421989	1831 bp distal
Rr421990	regulatory region 421990	1763 bp distal
Rr421991	regulatory region 421991	498 bp distal
Tssr9715	transcription start site region 9715	1722 bp downstream
Tssr9716	transcription start site region 9716	1706 bp downstream
Tssr9717	transcription start site region 9717	1623 bp downstream
Tssr9718	transcription start site region 9718	737 bp downstream
Tssr14623	transcription start site region 14623	1013 bp upstream
Tssr14624	transcription start site region 14624	1003 bp upstream
Tssr14625	transcription start site region 14625	970 bp upstream
Tssr14626	transcription start site region 14626	936 bp upstream
Tssr14627	transcription start site region 14627	891 bp upstream
Tssr14628	transcription start site region 14628	873 bp upstream
Tssr14629	transcription start site region 14629	838 bp upstream
Vamp4	vesicle-associated membrane protein 4	within coordinates