rs244647322 SNP Detail

Summary

• ID
  rs244647322
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156266935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaataaaaa tcttaaaaat aaaaaataaa
  atataCCAAT CAATAACACG TTAAGCAGTT TTTAAAAAGT TACCTGTAAA AACTGCATAG
  CGACATAACC CCATCTTACA GTAGGAGTCC TGAAAAGAAA GAGAAAAAAA GGTTTTTTTT
  W
  AAAATAAGCA ATGAACTCTT TCTGTTGTCC TTTTATCTAC AATGTCAAGA ACTGAATAAT
  GGTTTTCTAC ACATTATATC ATTTATGGGC TGGAGGAGTA GTTTAATAGG ACAGTATGCC
  ACAAAGCCTT GAATCTGATC TCCAACTCCC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072191	CHEV_1_158369496	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244647322					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156266935 () rs orientation: forward

Symbol	Name	Function Class
Rr31351	regulatory region 31351	1275 bp distal
Rr396421	regulatory region 396421	1750 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	330 bp upstream
Tssr14442	transcription start site region 14442	46 bp upstream