rs244649920 SNP Detail

Summary

• ID
  rs244649920
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28528341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTAACT CCTGAATTCT
  GGGATTAAAG GCTTGGAACA CCAACCCGGG CTTTCTGTTT GTTTTTATTT GGATGATTTT
  TTTTTAACAC ATTGAAGACA AACCTCAATG TGTTATTTGA ATACAAGGCT TCCTCATTTT
  AGGCAAGGGC CACCACAGGC CCCTCAGTGG TGGAAACTAG GCCAGTGCTC CACCACTGAG
  M
  CACACTCCCA GCTCTTCCCC TTGTGAATTC TGAGCAAACA GGGCCGTGCC CTCTACGCCA
  CTTGGTGAAT TCTAGGCAAG TGTTCAACCA CAGCTACAAA CCAGCATGGG TTGGGAGACA
  AGGGCTCACA GCCACCCCCC CGCACCCCCC CCAGCTATGT GTGGGAATAG CTTACTATTC
  ATGATGAATG TCTGAAAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370868075	MGP_WTSI_7_29613935	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	A	A	A	C	C	C	C	C	C	A	C	A	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A	C	C	C	A	C	C	C	C	A	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244649920					SNP	C	C	C	C	C	C	C	C	C	A	A	A	C	C	C	C	C	C	A	C	A	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A	C	C	C	A	C	C	C	C	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370868075	MGP_WTSI_7_29613935	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28528341 () rs orientation: forward

Symbol	Name	Function Class
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	1741 bp distal
Tssr65551	transcription start site region 65551	1392 bp downstream
Tssr65552	transcription start site region 65552	1284 bp downstream
Tssr65553	transcription start site region 65553	1091 bp upstream
Tssr65554	transcription start site region 65554	1171 bp upstream
Tssr65555	transcription start site region 65555	1191 bp upstream
Tssr65556	transcription start site region 65556	1226 bp upstream