rs244655181 SNP Detail

Summary

• ID
  rs244655181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117498482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCGCTGG GAGCACTCAG
  TACTCCGGGA CGCCCCCTAG AGCGGGAGAG GGTCGGACCC CCGGGAATCT CAAATATCGA
  CTTTCTGATG GTGTGTTCAG ATATGACTTC CTGGTGAAGG AGCATTCCTT GTGTTGTAAG
  TGCATCTCAC GACCTGAGCA GGCCAGACAT GTTTTTTATG TTAAAAGGAG GGCCTGCTTG
  Y
  CATCCTGGTG ATCCTCAAGC CACTCAAGAA AGCCCCAGTA AGCTCTCACT GACTTCCTTC
  CTACTCAGCA GAGCTTGGGA ATACCTTGGT ACATCCTACT CATACTTTTT TTAAAAATTA
  TTTTTTGATT ATTATGTAGT ATTTACTGAA AAATCGTAAC AATGGTGTGA TTTTTTTTTT
  TTTTGACTAG AAGTCTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324202011	CHEV_12_118773335	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244655181					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117498482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5227	CpG island 5227	107 bp distal
Gm60307	predicted gene, 60307	202 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates
Tssr115537	transcription start site region 115537	952 bp downstream
Tssr115538	transcription start site region 115538	920 bp downstream
Tssr115539	transcription start site region 115539	906 bp downstream