rs244657796 SNP Detail

Summary

• ID
  rs244657796
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24659576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTCAGA AGGTGGCAGA
  AGAGCTCACT AACGGGGTAG GTGTAGCCGC CATCGCTGCC GGCAGTGCTA CGTGAGGCCT
  TAGGATCCCT GGGGCAGAAT GATCAGGGCC TGCTCTCAAA TCCAGCAGGG TCCAGAAAGA
  CATTACCATC TGAGCTGCCA CTGGGTGACT GGGTGATGAT TCATACGAGC ATTTCAAGTT
  C
  GCACAAAGGC AATAAGGATA GGGAGCTGGC ATGGTGTGGA GGAGCCAGCA TCCTCCAGGC
  TGGGAAGTGA ACAACAACAA TGGAAATAGA CCTACTGGAC AGTAAGACCA GGCTCTGCAG
  CCTCGGTACA GAGGTCTCAG AAAGCAGAGG CCCCATCCAA CCTGTGGGTA GTCCTGGCCA
  AGAGCGGCTT GTTTATTAAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	SPRET/EiJ
ss397856343	MGP_WTSI_17_24577547	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	SPRET/EiJ
rs244657796					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397856343	MGP_WTSI_17_24577547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24659576 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	within coordinates
Eci1	enoyl-Coenzyme A delta isomerase 1	1286 bp downstream
Rr329768	regulatory region 329768	976 bp distal
Rr329769	regulatory region 329769	425 bp proximal
Rr337043	regulatory region 337043	673 bp distal
Rr340710	regulatory region 340710	within coordinates
Tssr146730	transcription start site region 146730	203 bp upstream
Tssr146731	transcription start site region 146731	1555 bp downstream