rs244669876 SNP Detail

Summary

• ID
  rs244669876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107971768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACACCA GGGTCAGGCT
  CAGCCCGGGC TACGGAGGCC ACGGGGGCCA CGGGCCGAGC CCTCACCTGA CGCTCCATAG
  TCGGTCTTTC GGTAGCAGCT AAGTCCCGGA AGTGAAGCTC CGGGGGCGGG GCCTAAGGCG
  GTCCCCAGTT TCCGCTACAC TCAGTGGCGA CCTGGGACCC GCAGGGCCCT GTATAAGCTC
  Y
  GGCCAGTCGG CAGGGGGCGG GGCCTGGATA GTAAGAAGGC GGGGCCTACG AAGGAGCCGC
  CCGGAGGGGA GGAGCGGGAA ACAAAAATTC AGTCGAAGAC TAGGCAAGTG GGAGGCAGAA
  TCAGGGAGTC GAGTCCTGGG ATTTTTAGAG AGGGGAGGCT CCGAGGAGTG AGGGCGGACG
  TATAGCAGCA GAATACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378860065	MGP_WTSI_9_107996900	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244669876					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378860065	MGP_WTSI_9_107996900	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107971768 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	32 bp upstream
Bsn	bassoon	1453 bp downstream
Cpgi22322	CpG island 22322	within coordinates
Gm57046	predicted gene, 57046	86 bp upstream
Rr401675	regulatory region 401675	within coordinates
Rr686707	regulatory region 686707	273 bp distal
Rr686708	regulatory region 686708	3 bp proximal
Rr686709	regulatory region 686709	27 bp proximal
Rr686710	regulatory region 686710	1187 bp proximal
Rr686711	regulatory region 686711	1711 bp proximal
Rr686712	regulatory region 686712	1933 bp proximal
Tssr87065	transcription start site region 87065	88 bp upstream
Tssr87066	transcription start site region 87066	623 bp upstream
Tssr87067	transcription start site region 87067	668 bp upstream
Tssr91491	transcription start site region 91491	82 bp upstream
Tssr91492	transcription start site region 91492	27 bp upstream