rs244677093 SNP Detail

Summary

• ID
  rs244677093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67374875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAACAGGG TTAACAAGCC GAGGCGGCGG
  AGCAGGGCAA GTAACAGCGA GAAGCGGCAA GGAGAATGCC TAGGGAGGCC CGCGCTGGCA
  CCGGTGTGCG CCGGTTCCTT GGCGATGCTG TGTAAAGTCG TCTTCCTCAG CCCCCGCGCC
  Y
  TCCTAGAAGC GCAGCCTCTT AGTCTTAGGC TAAGACAGGG ATGCGCGGGT GTCCGGCTTG
  GCCGAGGATG TTGGGAGGGA AGGGAACCCT AGACTCCTTC CTCCGCTGCC CGGGTTCACA
  CTGGCAGTCT TCAGCTGAAG CGCAGCGGGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323347580	CHEV_10_67001793	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244677093					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67374875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1668	CpG island 1668	1969 bp distal
Cpgi1669	CpG island 1669	1116 bp distal
Cpgi1670	CpG island 1670	within coordinates
Egr2	early growth response 2	within coordinates
Gm66196	predicted gene, 66196	1284 bp upstream
Rr369011	regulatory region 369011	1461 bp downstream
Rr401960	regulatory region 401960	1077 bp downstream
Rr433075	regulatory region 433075	1295 bp distal
Rr433076	regulatory region 433076	1165 bp distal
Rr433077	regulatory region 433077	352 bp distal
Rr433078	regulatory region 433078	within coordinates
Tssr93833	transcription start site region 93833	1832 bp downstream
Tssr93834	transcription start site region 93834	1168 bp downstream
Tssr93835	transcription start site region 93835	971 bp downstream
Tssr93836	transcription start site region 93836	850 bp downstream
Tssr93837	transcription start site region 93837	736 bp downstream
Tssr93838	transcription start site region 93838	546 bp downstream
Tssr93839	transcription start site region 93839	476 bp downstream
Tssr93840	transcription start site region 93840	205 bp upstream
Tssr93841	transcription start site region 93841	753 bp upstream
Tssr93842	transcription start site region 93842	808 bp upstream
Tssr93843	transcription start site region 93843	893 bp upstream
Tssr93844	transcription start site region 93844	929 bp upstream
Tssr93845	transcription start site region 93845	971 bp upstream
Tssr93846	transcription start site region 93846	1002 bp upstream
Tssr93847	transcription start site region 93847	1702 bp upstream
Tssr97950	transcription start site region 97950	1887 bp upstream
Tssr97951	transcription start site region 97951	1649 bp upstream
Tssr97952	transcription start site region 97952	1334 bp upstream
Tssr97953	transcription start site region 97953	117 bp downstream
Tssr97954	transcription start site region 97954	1092 bp downstream