rs244679768 SNP Detail

Summary

• ID
  rs244679768
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127871468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCGCGT CCCTCGGGGT
  CAAGGCCATG ACGGGGCGGC CCCTACCGCC CCAGCCAGGC CCGCGCGTCC TCTTCGGAAT
  TCATAGCCTT ATTTAGACCG CGCCACCGCC GTGCCCGTGA GAACAGCTGC TCGGCTGGCT
  ACAGGAAGTA GAGGCCCGCG CGCCTGACCC GGAAGCGCAT GCTGGTCCCG CCCTCTCGGC
  S
  CCCGGCTTCC TTCTGCAACA GGCGTGGGTC ACGGGCTCGC TCGTTCTCTT TCTGCCGCCA
  TCTTGGTTCC GTGATCTCCG CACAGTAAGT GCCGCTGGCG TCTCTGCTTT CCATCCGTAG
  CCATCCTCGC CTGCTGCCAG CTTTGCGGCA CCGGGCATTT AAGTTTAACA TCGCTGGCGG
  CTCTGTGGGG CTCAGCGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323531424	CHEV_10_127472655	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244679768					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127871468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	within coordinates
Gm66417	predicted gene, 66417	18 bp upstream
Gm66418	predicted gene, 66418	1559 bp downstream
Naca	nascent polypeptide-associated complex alpha polypeptide	within coordinates
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96287	transcription start site region 96287	1991 bp downstream
Tssr96288	transcription start site region 96288	1924 bp downstream
Tssr96289	transcription start site region 96289	1905 bp downstream
Tssr96290	transcription start site region 96290	261 bp downstream
Tssr96291	transcription start site region 96291	244 bp downstream
Tssr96292	transcription start site region 96292	219 bp downstream
Tssr96293	transcription start site region 96293	79 bp downstream
Tssr96294	transcription start site region 96294	5 bp downstream
Tssr96295	transcription start site region 96295	5 bp upstream
Tssr96296	transcription start site region 96296	26 bp upstream
Tssr96297	transcription start site region 96297	38 bp upstream
Tssr96298	transcription start site region 96298	619 bp upstream