rs244681415 SNP Detail

Summary

• ID
  rs244681415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101051550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC CATGGGCTGG GTGCTCCTAC
  R
  TCAACTAACA AGCCCCCCCC CCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
ss921524383	MGP_WTSI_12_101085291	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
rs244681415					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921524383	MGP_WTSI_12_101085291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101051550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	1053 bp distal
D130020L05Rik	RIKEN cDNA D130020L05 gene	within coordinates
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	1589 bp upstream
Rr387703	regulatory region 387703	53 bp downstream
Tssr114724	transcription start site region 114724	1548 bp downstream
Tssr114725	transcription start site region 114725	1489 bp downstream
Tssr114726	transcription start site region 114726	1459 bp downstream
Tssr117352	transcription start site region 117352	1804 bp upstream
Tssr117353	transcription start site region 117353	1680 bp upstream
Tssr117354	transcription start site region 117354	1574 bp upstream