rs244683689 SNP Detail

Summary

• ID
  rs244683689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8616811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCAAAT GTCACATGTA
  TAAAATTTGG CTTAATGTTT CTAATTAATC CTTAGTCTGT GGATGGACAG AAATTAAACT
  TTGAACAAAC CAACTCAGTT TTAAATTCAC TTTTCATTTA AGATTTTCCT CAGAATGCTA
  TCAAAGTAAT TTTGCACCTT AAAACAAAAT CTGAGCTTGT ACTCTATCAC TTCAGAGTTC
  Y
  GCTGTCTCCA GTTAACACCC AAATTCCTTA ATCACAAAAC ATTCCTAGGT TTTATTCTTT
  TTTTTTTCAG TTGTTCCTCA AGACACTTTT CACTTCAGCA CAAAGTTCAC ATGAAACTCT
  TTAATACTTT GAAGGCAGTT ATGTACTCCA AGAATTTGTA CTTCAGTTCC CCACCCTTCC
  TCCACCCTTC CTCCATCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463540	CHEV_5_8566811	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244683689					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8616811 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	242 bp upstream
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	282 bp upstream
Tssr45119	transcription start site region 45119	302 bp upstream