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rs244695323 SNP Detail
Summary
  • ID
    rs244695323
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    ChrX:40489109 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTAGGAGAGA GGCAGGAGAG
    TTGGGTGAGA GTGGTAATCT CTGAAGTCTG CACTCAGTGT GGGGGAGGGA ATAGTTGATC
    CACCTAAAGT CAACATTAAG GGAGCAAAGC AGCAAGGGGC ACTTTCCTCC AACCTTAACT
    TTCAATCCCC ACCCCCATCC CAGCTCACTC CCACACTTCT CTCCTTGGTC TGCAGGACTG
    W
    GCGTCCTTTT CATTAACCTT TTAGCTCCCA CCTCCATACA CATACTATGT TCCTATACCC
    TCTAAAGCAG TCAGCAGTCA CAGCCCCCGC AGCTGGCAAA CCTGCCTCAG CACTTGGGTA
    GGGGGAGGGA CACACCTCCC AGTGCTGCGG GGATGGGGGA ATGCGGGTGG GGGTTGTTCA
    CTTGCCCTCG GATCTCTCTC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403322476 MGP_WTSI_X_38753409 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244695323 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss403322476 MGP_WTSI_X_38753409 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:40489109 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gria3 glutamate receptor, ionotropic, AMPA3 (alpha 3) 622 bp upstream
Rr394967 regulatory region 394967 1221 bp upstream
Rr690837 regulatory region 690837 within coordinates
Rr690838 regulatory region 690838 806 bp proximal
Tssr160796 transcription start site region 160796 366 bp upstream
Tssr160797 transcription start site region 160797 425 bp upstream
Tssr160798 transcription start site region 160798 455 bp upstream
Tssr160799 transcription start site region 160799 484 bp upstream
Tssr160800 transcription start site region 160800 573 bp upstream
Tssr160801 transcription start site region 160801 607 bp upstream
Tssr160802 transcription start site region 160802 670 bp upstream
Tssr160803 transcription start site region 160803 926 bp upstream
Tssr160804 transcription start site region 160804 1157 bp upstream
Tssr160805 transcription start site region 160805 1244 bp upstream
Tssr160806 transcription start site region 160806 1382 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory