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rs244700602 SNP Detail
Summary
  • ID
    rs244700602
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:3308928 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGCAACCAG GGCCATCAGA
    GACGACTCTG CCTCCTTCAG GCTTGCACCA CCACCACAGG CATAGGGGCC AGCACAGGCA
    GGGTCACTTA GAGAGCTGAG ACACCACAGC AAGTGAAGGC TTGCACCTTT CACTTGCCCA
    GAGGAAGCTC TGACGAAGGG GGTGCATCAA CCAGCTCCTG TGTAAGTTGT CTAAGGAGTC
    Y
    GAGGCAGCCC CCAGCAGCTG CTGCTGTCAC TGCCGCCACC TCATATTTGA GAAGTCAGGG
    TCTGCAATTG CTTGACAGTG TGCGGAAAAC CTCCCATCCT TATGTAGCTG ACAGGGGCTT
    TTCGCGGAGG AGAAAGTCAC TGAATCCTGT CAGTGTAGGT CACCTCCAGC TGCCTGACAA
    AATCAGCCCA TGAACCCCAT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss392857648 MGP_WTSI_15_3229446 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244700602 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss392857648 MGP_WTSI_15_3229446 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:3308928 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ccdc152 coiled-coil domain containing 152 624 bp downstream
Rr498565 regulatory region 498565 1835 bp distal
Rr498566 regulatory region 498566 1853 bp proximal
Selenop selenoprotein P within coordinates
Tssr4538 transcription start site region 4538 186 bp downstream
Tssr130397 transcription start site region 130397 316 bp downstream
Tssr130398 transcription start site region 130398 263 bp downstream
Tssr130399 transcription start site region 130399 174 bp downstream
Tssr130400 transcription start site region 130400 150 bp downstream
Tssr130401 transcription start site region 130401 142 bp downstream
Tssr130402 transcription start site region 130402 78 bp downstream
Tssr130403 transcription start site region 130403 31 bp downstream
Tssr130404 transcription start site region 130404 within coordinates
Tssr130405 transcription start site region 130405 13 bp upstream
Tssr130406 transcription start site region 130406 44 bp upstream
Tssr130407 transcription start site region 130407 78 bp upstream
Tssr130408 transcription start site region 130408 114 bp upstream
Tssr130409 transcription start site region 130409 123 bp upstream
Tssr130410 transcription start site region 130410 144 bp upstream
Tssr130411 transcription start site region 130411 200 bp upstream
Tssr130412 transcription start site region 130412 275 bp upstream
Tssr130413 transcription start site region 130413 528 bp upstream
Tssr130414 transcription start site region 130414 576 bp upstream
Tssr130415 transcription start site region 130415 650 bp upstream
Tssr130416 transcription start site region 130416 947 bp upstream
Tssr133563 transcription start site region 133563 209 bp upstream
Tssr133564 transcription start site region 133564 178 bp upstream
Tssr133565 transcription start site region 133565 134 bp upstream
Tssr133566 transcription start site region 133566 122 bp upstream
Tssr133567 transcription start site region 133567 116 bp downstream
Tssr133568 transcription start site region 133568 187 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory