rs244710797 SNP Detail

Summary

• ID
  rs244710797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23899835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGCCAG CATCAGCTAT
  GCAGGGAATT TATGGCCAGC CAGCCTGGGC TACATAAGAC CCTTTCTCAG CTAAGATATA
  AAAAACAAAA CTAAACTAAA ATCTAGACAC AACTGTCGCT ATGGGCTGTC CTGTGCTTCA
  GGTATGTCTT ATTTCCTGTC CCTTGCATGA AAATCAACAG GATTTCATTC TCCACCTGTC
  R
  CAGTCTAGGA AAGAAGTAAA TGCTTATTTT GCTCTTGACT GACCCAGGAA GTGTATCTAA
  TCCACACTAC AGGACATAGC AGCCAACTGT CAAGGTGCTT GGTGCTGGTA TCAGCTGTCG
  AGGTGGGATG TCCAGACATG CTGCTCTTTA ACATGACTCT CCTTTTATCT CCTCCACACT
  ACACAGCCCC CTCAACCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397840262	MGP_WTSI_17_23817828	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244710797					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397840262	MGP_WTSI_17_23817828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23899835 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	within coordinates
Cldn9	claudin 9	1723 bp downstream
Cpgi8684	CpG island 8684	980 bp distal
Rr523108	regulatory region 523108	1192 bp distal
Rr523109	regulatory region 523109	871 bp distal
Tssr142943	transcription start site region 142943	1484 bp downstream
Tssr142944	transcription start site region 142944	1125 bp downstream
Tssr142945	transcription start site region 142945	1106 bp downstream
Tssr142946	transcription start site region 142946	177 bp upstream
Tssr142947	transcription start site region 142947	681 bp upstream
Tssr142948	transcription start site region 142948	934 bp upstream
Tssr146645	transcription start site region 146645	419 bp upstream