rs244711514 SNP Detail

Summary

• ID
  rs244711514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191451325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGGTCCA GGTCCGGGGC
  AGCGTGCGGA GACCGAGGGT CGCAGTGCGG GGCCGCCACC GGCTAGCGGG ACGGTCTAGC
  GTTGGTTAAC TGTGTTCCGC CGTGGCCCGT GCCCCGCAGA ACGGCTCTCT TGACCTTGTG
  CGGCTCCTCC CTCCTCACTG TCCCCCTCTG GAATTTGCCC TCGAGATCGC CAGGCGGGCG
  R
  GCGAGCGAGC GAGCGAGCGC TGCATCTGGA GAGCGTAGAC CCTCGCGTTT TCTTGTATTT
  TTGTGCTGGA GATTTCTGTG CTGCTGCCGC CGACTGCACC CATTTTTCCT TTTGAAATGA
  TTTTTTCCTT TCATCCCCAG AAAGACAGGA CCGACGCCAA TGTAAGAATG GCCGTGACCG
  TGGAAGAAGC TCCGTGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	SEA/GnJ	SM/J	SPRET/EiJ
ss352839512	MGP_WTSI_1_193543092	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	SEA/GnJ	SM/J	SPRET/EiJ
rs244711514					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352839512	MGP_WTSI_1_193543092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191451325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1225	CpG island 1225			within coordinates
Lpgat1	lysophosphatidylglycerol acyltransferase 1			Intron
				mRNA-UTR
Rr426207	regulatory region 426207			1369 bp distal
Rr426208	regulatory region 426208			814 bp distal
Rr426209	regulatory region 426209			1213 bp distal
Rr426210	regulatory region 426210			408 bp distal
Tssr10776	transcription start site region 10776			1309 bp downstream
Tssr10777	transcription start site region 10777			1183 bp downstream
Tssr10778	transcription start site region 10778			1152 bp downstream
Tssr10779	transcription start site region 10779			1123 bp downstream
Tssr10780	transcription start site region 10780			900 bp downstream
Tssr10781	transcription start site region 10781			819 bp downstream
Tssr10782	transcription start site region 10782			782 bp downstream
Tssr10783	transcription start site region 10783			within coordinates