rs244727746 SNP Detail

Summary

• ID
  rs244727746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCCAGC CTGGGGATGG
  ATGTGTGACC ACTGTTCCAG GCTCCTGCTC CTTCCTGAGC CGCCTGACTT AGCTCTGCCG
  CTAGTCTCCC TCCAACTCTG CTTTAAGCCT CTCCCTCAGG AAACTGGTGC CCTCCTCTAA
  AATGTCACTG TTCTCAGGAG GCAGAGGCAG AGGCAGGCGG ATTTCTGAGT TCAAGGCCAG
  Y
  CTGGTCGACA AAGTGAGTTC CAGGACAGCC AGGGCTACAC AGAGAAACCT TGTCTTGAAA
  AAACAAACAA ACAAAAACCC CCAAAACAAA CAAAAACCAA CCAACCAAAC AAAAATGTCA
  CTGTTTCCTT CTCTCGACCC TCCCTGGCCA TGGCCTCTCC TCACATCTCC TAACTCCCTC
  ATCTCGTCCC CTCCAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318837	CHEV_4_130373828	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244727746					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545224 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	1060 bp downstream
Tssr39264	transcription start site region 39264	1002 bp downstream
Tssr39265	transcription start site region 39265	678 bp upstream
Tssr39266	transcription start site region 39266	700 bp upstream
Tssr39267	transcription start site region 39267	718 bp upstream
Tssr39268	transcription start site region 39268	742 bp upstream
Tssr39269	transcription start site region 39269	789 bp upstream
Tssr39270	transcription start site region 39270	814 bp upstream
Tssr39271	transcription start site region 39271	853 bp upstream
Tssr39272	transcription start site region 39272	875 bp upstream
Tssr39273	transcription start site region 39273	935 bp upstream
Tssr39274	transcription start site region 39274	977 bp upstream
Tssr39275	transcription start site region 39275	993 bp upstream
Tssr39276	transcription start site region 39276	1029 bp upstream
Tssr39277	transcription start site region 39277	1045 bp upstream
Tssr39278	transcription start site region 39278	1058 bp upstream
Tssr43599	transcription start site region 43599	776 bp downstream
Tssr43600	transcription start site region 43600	799 bp downstream
Tssr43601	transcription start site region 43601	856 bp downstream