rs244753023 SNP Detail

Summary

• ID
  rs244753023
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128659561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACTGAGA CATGATCTCA
  CTCTGTAGCT CTAGCTGGCA TGAAACTCAC AGAGATCCTA CCTTTATGTC TCCCAGGTGT
  CAGGATTAGA GACATTAACT GTCATGCCCA GTTTTTTGTT GTTGTTTTGG GTTTTTTTTG
  TTTTTTTTTT GTTTTTTTTT TTTAATAGTT GTTTTTAATT ATTGGATTGT GATGATTTTT
  W
  AAAAAATATT TATTTATTTT ATGTGTCAGG TATTTTGTAT GTATGGATGT CTGTGTACCT
  GCACAATTAC AGATAGTTTT TAGTCTCAAT GTATGTGCTG GAAATTGAAC CTGGGTCCTC
  TGAAGGAACA GTCTGTGGTC TTAACTGTTG AGCCATTTCT CCATCCATGA AAACTCTTCC
  TTCCTTCTTT CTTTTCTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536219	CHEV_10_128260748	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244753023					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128659561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	1525 bp distal
Rr402366	regulatory region 402366	1870 bp downstream
Rr441332	regulatory region 441332	1785 bp distal
Rr441333	regulatory region 441333	892 bp distal
Rr441334	regulatory region 441334	1746 bp distal
Rr441335	regulatory region 441335	1428 bp distal
Rr441336	regulatory region 441336	373 bp distal
Sarnp	SAP domain containing ribonucleoprotein	within coordinates
Tssr96458	transcription start site region 96458	1955 bp downstream
Tssr96459	transcription start site region 96459	1919 bp downstream
Tssr96460	transcription start site region 96460	1892 bp downstream
Tssr96461	transcription start site region 96461	1779 bp downstream