rs244769677 SNP Detail

Summary

• ID
  rs244769677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18062474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTAGAT TTGGATTTCT
  GGGGGAAGTC TTTTTTTCCC CCCGGAAGGA GACAGCAACT CAGCCTAACG CTGGCAAAGA
  GACGTGAAGA CCACTTCTGG AGACCAAGGG AGAGATAGGA AAAAATACGT TTATAACATA
  GGAGGGAGGC AACTGTTAAA GCTGGGATCA CCAAATGAAG CGCCACATGT AGCAGGCGGG
  R
  AAGGGCCGGG CCAAGGAGGT GGCGGCGGTC GGGAGGCCGG AGCTGGGCGG CAAGCGAGAA
  ATCCCTGGGG CCGAGGCTCC TGGGTGCTCC CATTGTTCCG CGCCGTAGCC GAAGCGTGTG
  GCGTGTTTTT GCCTGGGGAG GTGTGTGTGT GTGTGGATCT GCGACTCCTC CACTTCCGCC
  TGCGGCCCAC GGAGCTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353244074	MGP_WTSI_2_17979290	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	G	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244769677					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	G	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353244074	MGP_WTSI_2_17979290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18062474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1810059C17Rik	RIKEN cDNA 1810059C17 gene			within coordinates
Cpgi11234	CpG island 11234			within coordinates
Gm57467	predicted gene, 57467			1706 bp downstream
Mir7655	microRNA 7655			183 bp upstream
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Intron
				Noncoding-Transcript-Variant
Rr396788	regulatory region 396788			1757 bp downstream
Rr552292	regulatory region 552292			1109 bp distal
Rr552293	regulatory region 552293			507 bp distal
Rr552294	regulatory region 552294			494 bp proximal
Tssr16359	transcription start site region 16359			1930 bp downstream
Tssr16360	transcription start site region 16360			518 bp downstream
Tssr22782	transcription start site region 22782			1673 bp upstream