rs244778418 SNP Detail

Summary

• ID
  rs244778418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:134619767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTTTAG CTTTTCTTAA
  TATTAAGTTC AGTTTCTTCT AAAAGATCTG CTTACTAAGT CTCGAAGGGC TGATTAACAT
  GCCTTTTCAT TTACAATGCA AAGGCACTAA CCACATATCC TCATAGTGGA GGTTTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGCGTGTGCC TTAGAATAAT
  R
  TATATATATA TATATTTGAG TGATAGTTGA GGAGTAAGGA AAACATTTCT TTCAGCTTTA
  TCCTTATACA ACTAGAGAGT TAGATCACTT CAGATGACTT CATTAAATTT TTGAGTTCTC
  AGTTACAGCT GACAGGACAT AAACTGCCTC TCAGCTTTAC AAGTACACTT TCACCTCCTC
  CAGGAGGCTG TCTTTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	WSB/EiJ
ss404664832	MGP_WTSI_X_132253557	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	WSB/EiJ
rs244778418					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404664832	MGP_WTSI_X_132253557	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:134619767 () rs orientation: forward

Symbol	Name	Function Class
Tmsb15a	thymosin beta 15a	within coordinates
Tssr164175	transcription start site region 164175	1609 bp downstream