rs244786503 SNP Detail

Summary

• ID
  rs244786503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126626251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACAGGAG GGAGGGCGGG
  CAGGAGGGGG TGTGGGAGGG GGGGCAGGGG CGGGGGGGGC GGGGGTTGTT ACCTGGAAGA
  TGAAGCTGCT CCAGTTGCTG GGATCCATGG CGGAGGGAGG AGGGAGGTGG CTCGCGCTCA
  CCCTGGGGCG GGAGGAGGCA GCTGTGGGGG AGGGGGACCC AAGGAGGAGG CGCGCAAGGA
  R
  GGAGGGGGGA GGAGGGTGGG GGAGCGGCGC ACACTGCGCG CCGGAGGGCG GGCGGGGGGC
  GCGAGGACAC ACAAGAGGCT GGAGCGGGCG CGAGCGCGAG TGCGCGCGGG GCCAGCGGGA
  GGGGGAGGGA CAGGAGGGAC TCTAGAGGGC GGAGGGACTG GGGAGCCACC CAGCAGCCCC
  GGTCGCCCCG AGCGCGAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J
ss373079248	MGP_WTSI_7_134170593	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J
rs244786503					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079248	MGP_WTSI_7_134170593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126626251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	within coordinates
Gm31749	predicted gene, 31749	within coordinates
Kif22	kinesin family member 22	650 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	74 bp upstream
Rr166710	regulatory region 166710	within coordinates
Rr370584	regulatory region 370584	140 bp upstream
Tssr74906	transcription start site region 74906	1944 bp upstream
Tssr74907	transcription start site region 74907	1922 bp upstream
Tssr74908	transcription start site region 74908	1515 bp upstream
Tssr74909	transcription start site region 74909	1227 bp upstream
Tssr74910	transcription start site region 74910	1190 bp upstream
Tssr74911	transcription start site region 74911	1125 bp upstream
Tssr74912	transcription start site region 74912	936 bp upstream
Tssr74913	transcription start site region 74913	833 bp upstream
Tssr74914	transcription start site region 74914	798 bp upstream
Tssr74915	transcription start site region 74915	769 bp upstream
Tssr74916	transcription start site region 74916	735 bp upstream
Tssr74917	transcription start site region 74917	654 bp upstream
Tssr74918	transcription start site region 74918	605 bp upstream
Tssr74919	transcription start site region 74919	583 bp upstream
Tssr74920	transcription start site region 74920	538 bp upstream
Tssr74921	transcription start site region 74921	471 bp upstream
Tssr74922	transcription start site region 74922	441 bp upstream
Tssr74923	transcription start site region 74923	299 bp upstream
Tssr74924	transcription start site region 74924	252 bp upstream
Tssr74925	transcription start site region 74925	54 bp upstream
Tssr74926	transcription start site region 74926	24 bp upstream
Tssr74927	transcription start site region 74927	67 bp downstream
Tssr74928	transcription start site region 74928	1041 bp downstream