rs244800501 SNP Detail

Summary

• ID
  rs244800501
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATGTTT CAGGTCCTGA
  ACTGGCTGCC TTCCTGAGCG CTCAGAGAAT AAAGCTTTCA TTTTTAAGCT TCCTGAGTCT
  GAAATAAGTT TTCTCGGCTT GTACCTCGAA CCCAACAGTA AGAATCCAGC CCAGTTCCAG
  CGGCAGAAAA AGCAAAGTCA AGGCAGTGGC TCTGATGTAT TCCTCTACCA CCAGGCTCCC
  K
  AGGACATGGC CAAACTCATT TCTGCACCAG GGCAAATGGG GAGGGATGCC AGCCTTGCTG
  GCATCTAGCT GATGAACAAA GTAGTCTCTG CTTCAATACT GATTTGGTCC GCTGAGACCA
  GAGGATCACT CGTCCTGAAC TCTGCTCCCT TCACGCTGAT GAAGCCCCAC GCTTCTGCTC
  TGAGGTCCCT CTTAGCTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104745	CHEV_12_77355135	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244800501					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	739 bp proximal
Gm47525	predicted gene, 47525	27 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1150 bp upstream
Rr403350	regulatory region 403350	897 bp upstream
Rr468112	regulatory region 468112	660 bp proximal
Rr468113	regulatory region 468113	1579 bp proximal
Tssr113934	transcription start site region 113934	1061 bp upstream
Tssr113935	transcription start site region 113935	1096 bp upstream
Tssr113936	transcription start site region 113936	1142 bp upstream
Tssr113937	transcription start site region 113937	1184 bp upstream
Tssr113938	transcription start site region 113938	1200 bp upstream
Tssr113939	transcription start site region 113939	1223 bp upstream
Tssr113940	transcription start site region 113940	1305 bp upstream
Tssr113941	transcription start site region 113941	1335 bp upstream
Tssr116711	transcription start site region 116711	898 bp downstream
Tssr116712	transcription start site region 116712	924 bp downstream