rs244801788 SNP Detail

Summary

• ID
  rs244801788
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8615694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATCAG ATCTACTTGG
  AGTTTTTGTT AAGTCATGAA GTAGGACAAT TCAAAAGCGA GTTTTATTAA TTTTTTTCAT
  CATAATACAG AAGCTTACCT CATCTATGAA GAACATCCCA ACAAACCCAC TGAATGTCTG
  GAACTGTAAG ATCTATACTT GCAGTCAATA TACAAGTACA GCTTCCAATT TTTGACCTAA
  M
  GGTACTGAGA AAACAGTAGT TCTTCAACAG CAATTGTGCT TCATAGTTGC ATTTTCATCT
  TCCTCAGGGT AGGAGCAGGG CAATGGCAGT GAGCTGTCAC TACAGTTAGC CAGTCTGTCA
  TCACATGGTT ACTATATATA AAAACAGACT TGCTGTTGTA CTTGCCCAAC CATGGGCTTT
  CCTAAGTTTT GAGACTATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463523	CHEV_5_8565694	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244801788					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8615694 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	1359 bp upstream
Rr130297	regulatory region 130297	1707 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1399 bp upstream
Tssr45119	transcription start site region 45119	1419 bp upstream