rs244803817 SNP Detail

Summary

• ID
  rs244803817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105435115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAATGG TATTAAACGA
  TCACAGCATT AGGAAGGTTG AGAACCACTG GGTTAAAGAG TAAAACAGGA GAAAAGGCAT
  CTGGAAGCTA TAAAGAGATG GAAGCTATGT TCAGAGTGGA ATACAGGTTG GGATGGAAGA
  GTTCAAACAG AGTAGTCATG GGACAAAAGA GCATACCAGG AGCGAAAGAA ACTGAGGAAA
  Y
  TGTGCAGCTG GTGTTTAGGG AGACTCCATG GAGACTTCCA TGGTAGCATG TAGGACCAGG
  GGGGAAAAGC TCACATCCAG CTCTCAGTGT CCAGGAGACA GAAGTTCTGG AGTTCTGGGG
  ATGAAGAGTA ACAGTGTGAG TCTTAGAAGC TAAAGGGCTT CTTTAGCAGT AGCAATACCA
  TATAGCTTTC CTTGTAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370574	CHEV_7_112934422	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244803817					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105435115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19545	CpG island 19545	916 bp proximal
Dchs1	dachsous cadherin related 1	within coordinates
Gm57787	predicted gene, 57787	259 bp downstream
Rr652815	regulatory region 652815	205 bp proximal
Rr652816	regulatory region 652816	1736 bp proximal
Tssr74105	transcription start site region 74105	1575 bp downstream
Tssr74106	transcription start site region 74106	1598 bp downstream
Tssr74107	transcription start site region 74107	1636 bp downstream
Tssr74108	transcription start site region 74108	1659 bp downstream