rs244822136 SNP Detail

Summary

• ID
  rs244822136
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63238869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACGTTTCA TAAAATGTAA CATCTGTGAG
  AATGTGTTAT AAACATGACA GTGCCCAAAA CAGCTGCGGA TCCCCACTTA GAGCTAGTTC
  TCCACAGTTT GGTTTGGAAC ACACACTTGC GAATGTAATT CACGTATCTC CCCCCCCCCC
  M
  CACACACACA CCTCTCCTct ccctcccttc tctgtccccc ttcctccctc ccccctcctt
  ctctccctca ctccctccTG TTTCACCCAC CCCCAGCCCC ATCGGTGATA TATCTCAGTA
  GGTTGTGGTT TTTTTTTAGC ATCGGACCTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319743120	CHEV_1_63246284	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244822136					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63238869 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	473 bp proximal
Gm56066	predicted gene, 56066	1554 bp downstream
Platr12	pluripotency associated transcript 12	518 bp upstream
Rr188	regulatory region 188	within coordinates
Rr371405	regulatory region 371405	266 bp upstream
Tssr7060	transcription start site region 7060	857 bp upstream
Tssr7061	transcription start site region 7061	871 bp upstream
Tssr7062	transcription start site region 7062	883 bp upstream
Zdbf2linc	Zdbf2 associated long non-coding RNA	648 bp upstream