rs244829884 SNP Detail

Summary

• ID
  rs244829884
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147827758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCTTT AACAAGACCA
  TTTACACATT TGCAGATGCT TGCAAGCACA CACACACACA CATACACACA CACACACACC
  TTTTGAACTA AACAATGATT CATCTTGCTG GACCTGGCCT TGCTCTATTT ATCCCTACTT
  GTCATTGGGT GTTTGATGCA GAGTCAATTC AGTCATCATT CCTGGGCAGC TAAGCTCTGA
  S
  CATGTGTCTC TAGGAAATCA AGACTTTTTT CTTTTCTCTA AGAGATTTTT GTCGAATTGT
  TAAACAAAAC AAACCAGAGG GGTGAAGTAC TAAATCTCTG TGTTGCAGAA TTTCTGGAAT
  AGAGAAGAAA AGCAGAGGCT GAGAAGCGCA CCCCAACATT TTCCACACCA TTTCAGGAAA
  ACTACCCACA CCCTCCAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356060120	MGP_WTSI_2_147811574	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244829884					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356060120	MGP_WTSI_2_147811574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147827758 () rs orientation: forward

Symbol	Name	Function Class
9030622O22Rik	RIKEN cDNA 9030622O22 gene	within coordinates
Rr374033	regulatory region 374033	within coordinates
Rr566833	regulatory region 566833	388 bp distal
Rr566834	regulatory region 566834	287 bp distal