rs244837170 SNP Detail

Summary

• ID
  rs244837170
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108902945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATCTCC GCCACTCTGG
  ATTTGGGGAT CTGAACCCGA CTCCCCTTCA ATCGGCCGAG GGCAACGGAG GCCATCGCCC
  ATCCCTTCGG AACGGCACTC ACCCATCTCT CAGGACTGAC TGACCCATGT TTAACTGCTG
  TTCACATGGA ACCCTTCTCC ACTTCGGCCT TCAAAGTTCT CGAATGATTA TTTGCTACTA
  T
  CACTCGTCGG ATGCCTGCAT GAGGACCATC ACCTTCACGA GGTTCTCCCT CTAGGAAGGC
  AATCTTATCT GATTCACTGA AGATGTTCTC TTATGGGCTG ACATGGTCGG TCTTTGCTGG
  GCTTCAGCTT TCCCTTGCCT GACCCTGTAC TGGGGGTCAG GGGTGCGGAC AACAACGCTG
  ACTGTGGCCC CAAGTGGAAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss384649008	MGP_WTSI_11_108873433	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs244837170					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384649008	MGP_WTSI_11_108873433	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108902945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	within coordinates
Gm36876	predicted gene, 36876	within coordinates
Tssr105627	transcription start site region 105627	364 bp downstream
Tssr105628	transcription start site region 105628	293 bp downstream
Tssr105629	transcription start site region 105629	260 bp downstream
Tssr105630	transcription start site region 105630	213 bp downstream
Tssr105631	transcription start site region 105631	125 bp downstream
Tssr111515	transcription start site region 111515	387 bp upstream
Tssr111516	transcription start site region 111516	337 bp upstream
Tssr111517	transcription start site region 111517	266 bp upstream
Tssr111518	transcription start site region 111518	248 bp upstream
Tssr111519	transcription start site region 111519	237 bp upstream
Tssr111520	transcription start site region 111520	179 bp upstream
Tssr111521	transcription start site region 111521	119 bp upstream