rs244844322 SNP Detail

Summary

• ID
  rs244844322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126622315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGGGAA GAGGAGACTG
  TACCAAGAAG AGCTTTCCTC CACTCTCCCC TCTCCCCCAT CAACTTGGAG CTCACCAAGG
  CTGGGAGGGA AGTGGCTGAG AGCTCACTGG TACCCCCTCT GCCCCAGAGA GGGAGCCCAC
  AGCTGTGGGG GGGGCTGCCA CCACTGCTGC TGCCGCCGCC GCCGCTGCTG CTGCCGCTGC
  Y
  GCCATTGGAC AAACCTCACC AGTACCTATA GGGAGAAACA CCAAGGATCA CAGCACAACC
  TAAATGGCAA GAAACATGTT CCATACCCCA GACTTTTCAA CTATTTCCCT ATTTCCCCTG
  GGACACAGCC GTTACTTCCT ATCTGGTCCC CAGAGGCTTC GGCCTGCCTG CTTACCCAGA
  CTGAGCATGT CCATACTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079231	MGP_WTSI_7_134166657	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244844322					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079231	MGP_WTSI_7_134166657	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126622315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19726	CpG island 19726	1714 bp distal
Gm53372	predicted gene, 53372	879 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Prrt2	proline-rich transmembrane protein 2	1932 bp upstream
Rr368440	regulatory region 368440	1219 bp upstream
Rr655671	regulatory region 655671	1746 bp distal
Rr655672	regulatory region 655672	1783 bp distal
Rr655673	regulatory region 655673	842 bp distal
Rr655674	regulatory region 655674	1638 bp proximal
Tssr69153	transcription start site region 69153	1781 bp downstream
Tssr69154	transcription start site region 69154	1729 bp downstream
Tssr69155	transcription start site region 69155	1696 bp downstream
Tssr74900	transcription start site region 74900	1991 bp upstream
Tssr74901	transcription start site region 74901	1954 bp upstream
Tssr74902	transcription start site region 74902	1927 bp upstream
Tssr74903	transcription start site region 74903	1548 bp upstream
Tssr74904	transcription start site region 74904	1508 bp upstream
Tssr74905	transcription start site region 74905	1756 bp downstream
Tssr74906	transcription start site region 74906	1938 bp downstream