rs244852614 SNP Detail

Summary

• ID
  rs244852614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122826890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGTCGC CAAATTGTCT
  AAAGTGTCCT GCTCACATGT CATCCATCAC TGTTCACCTG AGAACTCTGC TTAGGTTCCC
  AGGGCCACAT CTTCACACAT CTGTACTCAT ATTGTTTCTT TTTGAAGAGG CTTTGTCTTG
  GGTACAGTTG GTAGAGTGCG TGAGCTCTTC GCTGAAGGCT GCTTCCAGAA TGCCCTTTAT
  R
  GACTGTCTTG CTTTCTTCCT AAAGTCTTTC CCCAAGAGGG CATACAGGAA AGGGTTGAAG
  CAACTATTGG CAGATGCTAA AGCAATGGAC ATGTGGTCCC AGGACATCAC AGCTTCCCCC
  AAGGAACTTT CTGGATCAGT AATCAATAGC AGGACTCCGA CAAGATGGTA TGGAGTCCAG
  CAGATAAAAA AGACAGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914781	MGP_WTSI_6_122799949	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244852614					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914781	MGP_WTSI_6_122799949	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122826890 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	1955 bp downstream
Tssr58710	transcription start site region 58710	1735 bp downstream
Tssr58711	transcription start site region 58711	526 bp upstream
Tssr58712	transcription start site region 58712	644 bp upstream
Tssr58713	transcription start site region 58713	700 bp upstream
Tssr62969	transcription start site region 62969	1732 bp upstream
Tssr62970	transcription start site region 62970	1712 bp upstream
Tssr62971	transcription start site region 62971	1652 bp upstream
Tssr62972	transcription start site region 62972	1552 bp upstream
Tssr62973	transcription start site region 62973	1491 bp upstream
Tssr62974	transcription start site region 62974	1405 bp upstream
Tssr62975	transcription start site region 62975	1320 bp upstream
Tssr62976	transcription start site region 62976	1231 bp upstream
Tssr62977	transcription start site region 62977	1173 bp upstream
Tssr62978	transcription start site region 62978	1119 bp upstream
Tssr62979	transcription start site region 62979	1086 bp upstream
Tssr62980	transcription start site region 62980	1070 bp upstream
Tssr62981	transcription start site region 62981	1051 bp upstream
Tssr62982	transcription start site region 62982	892 bp upstream
Tssr62983	transcription start site region 62983	434 bp upstream
Tssr62984	transcription start site region 62984	338 bp upstream
Tssr62985	transcription start site region 62985	299 bp upstream
Tssr62986	transcription start site region 62986	4 bp upstream
Tssr62987	transcription start site region 62987	109 bp downstream
Tssr62988	transcription start site region 62988	177 bp downstream
Tssr62989	transcription start site region 62989	336 bp downstream
Tssr62990	transcription start site region 62990	382 bp downstream
Tssr62991	transcription start site region 62991	409 bp downstream
Tssr62992	transcription start site region 62992	434 bp downstream
Tssr62993	transcription start site region 62993	528 bp downstream
Tssr62994	transcription start site region 62994	634 bp downstream
Tssr62995	transcription start site region 62995	751 bp downstream
Tssr62996	transcription start site region 62996	811 bp downstream
Tssr62997	transcription start site region 62997	953 bp downstream
Tssr62998	transcription start site region 62998	1008 bp downstream
Tssr62999	transcription start site region 62999	1079 bp downstream
Tssr63000	transcription start site region 63000	1136 bp downstream
Tssr63001	transcription start site region 63001	1159 bp downstream