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rs244853803 SNP Detail
Summary
  • ID
    rs244853803
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:47122801 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCTCTGAGC ATCTGCGTCG
    GACCCGACCC TTCTTCACTT CCCCTGTCCG CTTTGGGGCT TTGACCATTG TGAACTCCTT
    AGTCCATTCC GTGTTGTAGC TACGGTAGCA TGAATGATTG ATTTTTCTCT CCTGCGCTTT
    CCTTGGAAAT AAGTAAGTCA GGTCACGTAG AGTCTGGATT TTCTGCCACC CCCCCCCCCC
    Y
    TTTCGGGTAA CGTGGCTCGC TGGCTTTCAG CAATACACCA GGAAGCTCAG GACTGCCCCT
    TCAGTCACTG AGCTCAGACA GGCTGTAAGA ATACCTGAAA ATGCAATTTT ATTATTCATT
    CTCCTTCAAC CCCCACGGAT AGCACTGTTT TAGAGGTTTG TCTTCCGAAT AATATGTAGG
    TGACGCTATA GACTGTTAAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324592438 CHEV_14_47505019 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs244853803 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:47122801 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
2810457G06Rik RIKEN cDNA 2810457G06 gene 280 bp upstream
Cpgi6376 CpG island 6376 193 bp distal
Rr297079 regulatory region 297079 within coordinates
Samd4 sterile alpha motif domain containing 4 within coordinates
Tssr4382 transcription start site region 4382 1294 bp downstream
Tssr125243 transcription start site region 125243 759 bp downstream
Tssr128301 transcription start site region 128301 315 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory