rs244867102 SNP Detail

Summary

• ID
  rs244867102
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20971852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCGACTT GGAAGAATAC
  TCCAACCCCT AGTAAGCATC GTGTTCCCTA AGCTTGTACA ATTAGGGACA CTCCCAGTTA
  CCTGAAGACA GTTTTAGGGT GCTAGGCCAG GCTTCACCCT GAGAAGATCA TAGAATGCAC
  TGATGTGCTG TGGGAAGTGG GGGATACCCA AGAGAACCAG AGGTAGAGCA TGGTTGGGGG
  K
  GTGTGTGAGG TATTGTACCT GATGGTTCTC AGAGAGTACT TCAACCCACA CCTGACTGAT
  CACAGACACA ACTGGGCCAA TAAATCATCT GAATTAGGAC ATTTTCGTCT ATAGCTCATT
  CAGAAATTCT CAACTGTATT TTAAAAACCC AGAGGTTCTG AAGACACTAG TCAAAAATCA
  CACCATCTAA CTCCCCGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss385297033	MGP_WTSI_12_20927712	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	G	G	G	G	T	T	T	T	T	T	T	T	G	G	T	G	G	T	G	T	T	G	G	T	G	G	T	G	T	G	T	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs244867102					SNP	G	G	G	T	G	G	G	G	T	T	T	T	T	T	T	T	G	G	T	G	G	T	G	T	T	G	G	T	G	G	T	G	T	G	T	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385297033	MGP_WTSI_12_20927712	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20971852 () rs orientation: forward

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	589 bp upstream
Cpgi4472	CpG island 4472	327 bp distal
Rr463638	regulatory region 463638	807 bp distal
Rr463639	regulatory region 463639	99 bp distal
Rr463640	regulatory region 463640	361 bp distal
Rr463641	regulatory region 463641	314 bp distal
Tssr115849	transcription start site region 115849	768 bp upstream
Tssr115850	transcription start site region 115850	615 bp upstream
Tssr115851	transcription start site region 115851	578 bp upstream