rs244878136 SNP Detail

Summary

• ID
  rs244878136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:34723925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCAGGT CCCCTAACAA
  TTGAAGCAGG GCTGTCTCTG ACTCTGCTGC CTGCCATTGT ACCCCTTACC CTACCTGGAC
  CGCCTGGTTG GAACATGCTT ATTTAACTCC GCTGGGATTT GATGTCCCAG GATGAGGTGG
  TACTGGGGGG GGGGGGGGAC ACGACTCCCC TTCTCTGAGA AAAGAGGGAG GGGTAGTAGT
  R
  GGGATAGGGA TTGGGGGGCG GGACTGGGAG GAAAGTGGGG AGGGGGCTGC GATTGGGATA
  TAATGTGAAT AAAAGAAAAA CAACAAAAAA AGTAAATAAG TAAAACATAA GCGAATGAGA
  TGTTACAATG AGACTCCGTC CTGTGTGTCT GCTACATAAT TGTAAGTTAA TTCAGACTGC
  ACCACTGGCT AAGGGTACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382963782	MGP_WTSI_11_34646600	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244878136					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382963782	MGP_WTSI_11_34646600	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34723925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	116 bp proximal
Gm57348	predicted gene, 57348	584 bp upstream
Rr402479	regulatory region 402479	407 bp upstream
Rr444978	regulatory region 444978	within coordinates
Rr444979	regulatory region 444979	533 bp proximal
Rr444980	regulatory region 444980	617 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	Intron
Tssr100930	transcription start site region 100930	621 bp upstream
Tssr100931	transcription start site region 100931	688 bp upstream
Tssr107398	transcription start site region 107398	486 bp downstream
Tssr107399	transcription start site region 107399	505 bp downstream
Tssr107400	transcription start site region 107400	533 bp downstream