rs244888380 SNP Detail

Summary

• ID
  rs244888380
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3371923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCCCTC CTGGCCGGCA
  GGGAGGGCCT GCTGTCAAGG CCGCTGAGCC TCCTGGACAG ACAGGGCACA GGGCCAATCC
  AGAGGGACGC AAAGCAGGAC GCCAAGAAAA GAGGAAGTGT CCTTGGGGAG GGGACCGGTT
  AGGACTGGGG TTCTAGGGAG AGAAGGAAGG GCATTTAAGG TGAGTCCAAC AGTCCAGGAC
  K
  TAAAAGGAGC CTTAAGTAGG GGGCAGCAAG AGGTGACACT AGAGCCATCG AGGCCGATGA
  GGCCCGGGGG ACAGCAGAAA GTGTTTCCAG ATAGCACCTC TGCAGTGCCA GCCACATGTC
  ACACTGGTCT CTGCTTCCAC GCTCAGGAAC AGGTGCTCAG ATAAGGATGC TTAAGAAGAT
  GGAAGGCGTT TGGGTGTGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401617491	MGP_WTSI_19_3321923	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244888380					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401617491	MGP_WTSI_19_3321923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3371923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10363	CpG island 10363	561 bp proximal
Cpgi10364	CpG island 10364	961 bp proximal
Cpt1a	carnitine palmitoyltransferase 1a, liver	411 bp upstream
Gm58963	predicted gene, 58963	218 bp downstream
Rr394044	regulatory region 394044	1951 bp upstream
Rr542375	regulatory region 542375	797 bp distal
Rr542376	regulatory region 542376	891 bp distal
Rr542377	regulatory region 542377	within coordinates
Rr542378	regulatory region 542378	340 bp proximal
Rr542379	regulatory region 542379	837 bp proximal
Rr542380	regulatory region 542380	1275 bp proximal
Rr542381	regulatory region 542381	1570 bp proximal
Tssr154175	transcription start site region 154175	369 bp upstream
Tssr154176	transcription start site region 154176	1404 bp upstream
Tssr154177	transcription start site region 154177	1417 bp upstream
Tssr157384	transcription start site region 157384	1797 bp downstream