rs244894553 SNP Detail

Summary

• ID
  rs244894553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58891328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGCTTCC CAGGCCTCGA GTCACCACTC
  ATAGGTGGAA AGGGGACAGA CTCCTGCAAG AACCCCTCTT TGTGCCCCCT GTCCTTGGCA
  GTGGTTTCAT GAGTCAACCC CGTGGAGGGT GGGAACAGGA GTTGTTCCTT GCATGCCTCA
  R
  GAGAGGGGCC AGTCGTGACT GGTGGGTTGT CCAGGGAGTG GCTTCGGCCT GGGACCTCTC
  TGACACTGGA ACTAGGTAGT CGCAGGGCAG TCTCAAAGGA GGGTGTCTTG GTCATCAGAG
  AGGCCTGCTC TTCCCTAGCC GCCTCTTCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323695589	CHEV_11_58814004	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244894553					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58891328 () rs orientation: forward

Symbol	Name	Function Class
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1918 bp proximal
Tssr101781	transcription start site region 101781	1132 bp downstream
Tssr108186	transcription start site region 108186	1265 bp upstream
Tssr108187	transcription start site region 108187	1221 bp upstream
Tssr108188	transcription start site region 108188	1095 bp upstream
Tssr108189	transcription start site region 108189	1680 bp downstream
Tssr108190	transcription start site region 108190	1696 bp downstream
Tssr108191	transcription start site region 108191	1853 bp downstream
Tssr108192	transcription start site region 108192	1872 bp downstream
Tssr108193	transcription start site region 108193	1889 bp downstream
Tssr108194	transcription start site region 108194	1919 bp downstream