rs244909407 SNP Detail

Summary

• ID
  rs244909407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42204124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCATGTT TATCTTTTGG
  TTCAAACAGC TCGGCTGGGG GAGGGGAACT ACATTATATG TTTTATGAAT CCTACCCATT
  GGGTATTTCA TTTAATAAAA TAGAAGACAT CTTACTGGAA TATTAAAATG GTACTCTTTC
  ATTGTAAGGC TGACATAGTA TTACCCACCA CCCGAGCTTT CTAGCTGCAT AATCTTTGCT
  Y
  CTATGACCAA ATTTACTTTT TGGTAGGCAT ATTTTCTTCC TCTGCAAAAC ATTATTTTTG
  GCTCTAAGCT TGCCATTACC AAGTATTCCA TTTTTAATAA TTTCCATTCT GGGGCTTTGT
  GCTTTTCTTA GCTCCAGCAA GCTAGAGGTA GGACTTCCTC GGGGGATTTT AGGGGTCAAC
  CGTTAGCAGG AACGACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388403601	MGP_WTSI_13_42146017	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244909407					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388403601	MGP_WTSI_13_42146017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42204124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5502	CpG island 5502	825 bp distal
Cpgi5503	CpG island 5503	582 bp proximal
Gm28707	predicted gene 28707	73 bp downstream
Gm61288	predicted gene, 61288	within coordinates
Gm61314	predicted gene, 61314	65 bp downstream
Hivep1	human immunodeficiency virus type I enhancer binding protein 1	1180 bp upstream
Rr281297	regulatory region 281297	within coordinates
Rr403731	regulatory region 403731	760 bp upstream
Tssr119424	transcription start site region 119424	1279 bp downstream
Tssr119425	transcription start site region 119425	1042 bp downstream
Tssr119426	transcription start site region 119426	636 bp upstream
Tssr119427	transcription start site region 119427	1100 bp upstream
Tssr119428	transcription start site region 119428	1194 bp upstream
Tssr119429	transcription start site region 119429	1348 bp upstream
Tssr119430	transcription start site region 119430	1367 bp upstream
Tssr119431	transcription start site region 119431	1464 bp upstream
Tssr119432	transcription start site region 119432	1668 bp upstream