rs244920051 SNP Detail

Summary

• ID
  rs244920051
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124607858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAAACTG GCCTAGAACT
  CACAAAGATC TGTTTGCCTC CACCTTCTGC CTCTTCTGCC TCTGCTTCTT CCTCTTCCTC
  CTCTTTTAAG GAAAGGCAGT CTAGATTTCA TTTTCTAAGC CATACAGTGG CTAGGTGTGG
  TGGCTCATAC CTGTAATTCC AGCAAGTGGT AGGCGAAAAG CAGAAAAATA AAGAATTACA
  K
  GGAATTGGGG CTGGTGAGAT GGCTCAGTGG GTAAGAGCAC CCGACTGCTC TTCTGAAGGT
  CGGAAGTTCA AATCCCAGCA ACCACATGGT GGCTCACAAC CACCCGTAAT GAGATCCGAT
  GCCCTCTTCT GGTGTGTCTG AAGACAGCTA CAGTGTACTT TACATATAAT AAATAAATAA
  ATCTTTTAAA AAAAAAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321294518	CHEV_4_124391309	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244920051					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124607858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14778	CpG island 14778	465 bp proximal
Rr367691	regulatory region 367691	490 bp upstream
Rr599340	regulatory region 599340	1029 bp distal
Rr599341	regulatory region 599341	116 bp proximal
Rr599342	regulatory region 599342	257 bp proximal
Rr599343	regulatory region 599343	391 bp proximal
Sf3a3	splicing factor 3a, subunit 3	Intron
Tssr38902	transcription start site region 38902	744 bp upstream