rs244941127 SNP Detail

Summary

• ID
  rs244941127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAAATTA TGACATGTTC
  ACAATTGAGC TATTACTTAA TAAGGAGAAT TAATAAAATA AAACTTAAGA GCATAGTTTA
  ATCTCATAAA CAAGATAATA AGCAAAACAA AACATTTTTT CATCCATGTA AGTTTAAAAG
  CAGGTAAAAT TTAAAATTAA GAGAGACATA AGTTTTGAGG TAGCAAGATG GAAACTCTGG
  R
  GCTTGGGGAA TGTTCTGTCT CTCTGTATGG GATGTGAAAG TTACTATTGT GGAATTGGGA
  TCTATGTTCT TCCTGTATAT ATTGTATACT TCATAATAAC TTCACCTAAA GAAATATCTA
  ATACCCAGTG CATACATAAA AGAGGATACA AGGAATGAAT CATACGTCAA GGCCAGAAAG
  ACAATAAAGT AGGGGATCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815816	CHEV_6_70677863	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244941127					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704853 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1344 bp upstream
Gm68839	predicted gene, 68839	903 bp upstream
Igk	immunoglobulin kappa chain complex	1115 bp downstream
Igkc	immunoglobulin kappa constant	1115 bp downstream
Rr158	regulatory region 158	1918 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399686	regulatory region 399686	1058 bp downstream
Tssr1880	transcription start site region 1880	1018 bp downstream
Tssr56957	transcription start site region 56957	1397 bp downstream
Tssr56958	transcription start site region 56958	1381 bp downstream
Tssr56959	transcription start site region 56959	1363 bp downstream
Tssr56960	transcription start site region 56960	1348 bp downstream
Tssr56961	transcription start site region 56961	1332 bp downstream
Tssr56962	transcription start site region 56962	1320 bp downstream
Tssr56963	transcription start site region 56963	1273 bp downstream
Tssr56964	transcription start site region 56964	1262 bp downstream
Tssr56965	transcription start site region 56965	1250 bp downstream
Tssr56966	transcription start site region 56966	1242 bp downstream
Tssr56967	transcription start site region 56967	1222 bp downstream
Tssr56968	transcription start site region 56968	1192 bp downstream
Tssr56969	transcription start site region 56969	1168 bp downstream
Tssr56970	transcription start site region 56970	1149 bp downstream
Tssr56971	transcription start site region 56971	1137 bp downstream
Tssr56972	transcription start site region 56972	1078 bp downstream
Tssr56973	transcription start site region 56973	1067 bp downstream
Tssr56974	transcription start site region 56974	1037 bp downstream
Tssr56975	transcription start site region 56975	1000 bp downstream
Tssr61321	transcription start site region 61321	1360 bp upstream
Tssr61322	transcription start site region 61322	1212 bp upstream
Tssr61323	transcription start site region 61323	1131 bp upstream
Tssr61324	transcription start site region 61324	1054 bp upstream
Tssr61325	transcription start site region 61325	1021 bp upstream
Tssr61326	transcription start site region 61326	1008 bp upstream
Tssr61327	transcription start site region 61327	982 bp upstream
Tssr61328	transcription start site region 61328	904 bp upstream