rs244943392 SNP Detail

Summary

• ID
  rs244943392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115218624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACTTAGG GGCTAGACTC
  CTCCCTTTCA TGGTCCACAT CTGATTAAGT CCAGTAAATT CTCCTTAAAT ATTTCCCCAA
  ATCTGTCCAC TTCTCTTCAG CTTTACTGCC AACAGCATCT TATTCTGGAC CCCTGAATGG
  ATTCCTCATA TTTATTTACA CATTCTTTTG AGATAGGCTC TATGTAGCTC AGGCTGGCCT
  Y
  TTCTTCCTCT GGTCTGGGGT CACAGACATG TACAAACACA CCAGGCTTGG TTGGGCTCCC
  TTTGTTACAG CTCACTCAGC TCCCCTCTTC CAGTGCTCCT GTACCCCTGT ACCCACAATG
  ACGGATGCAT CAGTGTTTAT TTCAGTTGAC ATGTAACGTA ATTTCCCCAT GAAGGAAACA
  GCAGATAGAT TTAACATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484706	CHEV_10_114819775	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244943392					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115218624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	1316 bp proximal
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	1574 bp proximal
Rr439215	regulatory region 439215	1681 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	1198 bp upstream
Tssr99330	transcription start site region 99330	1607 bp downstream
Tssr99331	transcription start site region 99331	1618 bp downstream
Tssr99332	transcription start site region 99332	1669 bp downstream
Tssr99333	transcription start site region 99333	1757 bp downstream
Tssr99334	transcription start site region 99334	1797 bp downstream